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Molecular Modelling and Drug Discovery
Valence Discovery
60 episodes
6 days ago
Welcome to this space dedicated to the M2D2 Talks co-organized by Valence Discovery and Mila - Quebec AI Institute. From applied research papers to open source projects, we're hoping to use these talks to help demystify AI for drug discovery and make the field more accessible for newcomers. M2D2 will bring our vibrant AI & drug discovery communities together and spark new perspectives, provoke discussions, and offer a safe space to share new ideas. For the best experience, please visit our YouTube channel where slides and video presentations can be referenced.
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Science
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All content for Molecular Modelling and Drug Discovery is the property of Valence Discovery and is served directly from their servers with no modification, redirects, or rehosting. The podcast is not affiliated with or endorsed by Podjoint in any way.
Welcome to this space dedicated to the M2D2 Talks co-organized by Valence Discovery and Mila - Quebec AI Institute. From applied research papers to open source projects, we're hoping to use these talks to help demystify AI for drug discovery and make the field more accessible for newcomers. M2D2 will bring our vibrant AI & drug discovery communities together and spark new perspectives, provoke discussions, and offer a safe space to share new ideas. For the best experience, please visit our YouTube channel where slides and video presentations can be referenced.
Show more...
Science
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Structure-aware Protein Self-supervised Learning | Can Chen
Molecular Modelling and Drug Discovery
30 minutes 19 seconds
2 years ago
Structure-aware Protein Self-supervised Learning | Can Chen

[DISCLAIMER] - For the full visual experience, we recommend you tune in through our YouTube channel to see the presented slides.

If you enjoyed this talk, consider joining the Molecular Modeling and Drug Discovery (M2D2) talks live.

Also, consider joining the M2D2 Slack.

Abstract: Deep learning, and in general, auto-differentiation frameworks allow the expression of many scientific problems as end-to-end learning tasks. Common themes in scientific machine learning involve learning surrogate functions of expensive simulators, sampling complex distributions directly or time-propagation of known or unknown differential equation systems efficiently. We will describe our recent work in applying deep-learning surrogates and auto-differentiation techniques in molecular simulations. In particular, we will explore active learning of machine learning potentials with differentiable uncertainty; the use of deep neural network generative models to learn reversible coarse-grained representations of atomic systems; and the application of differentiable simulations for reaction path finding without prior knowledge of collective variables. Overfitting and lack of generalizability are constant challenges in AI for science. We will discuss the scalability of active learning to practical applications in molecular simulations and the sensitivity of deep learning answers to molecular problems, like the fitting of pair potentials from observables.

Speaker: Can Chen

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Twitter - Valence Discovery

Molecular Modelling and Drug Discovery
Welcome to this space dedicated to the M2D2 Talks co-organized by Valence Discovery and Mila - Quebec AI Institute. From applied research papers to open source projects, we're hoping to use these talks to help demystify AI for drug discovery and make the field more accessible for newcomers. M2D2 will bring our vibrant AI & drug discovery communities together and spark new perspectives, provoke discussions, and offer a safe space to share new ideas. For the best experience, please visit our YouTube channel where slides and video presentations can be referenced.