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Molecular Modelling and Drug Discovery
Valence Discovery
60 episodes
1 week ago
Welcome to this space dedicated to the M2D2 Talks co-organized by Valence Discovery and Mila - Quebec AI Institute. From applied research papers to open source projects, we're hoping to use these talks to help demystify AI for drug discovery and make the field more accessible for newcomers. M2D2 will bring our vibrant AI & drug discovery communities together and spark new perspectives, provoke discussions, and offer a safe space to share new ideas. For the best experience, please visit our YouTube channel where slides and video presentations can be referenced.
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Science
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All content for Molecular Modelling and Drug Discovery is the property of Valence Discovery and is served directly from their servers with no modification, redirects, or rehosting. The podcast is not affiliated with or endorsed by Podjoint in any way.
Welcome to this space dedicated to the M2D2 Talks co-organized by Valence Discovery and Mila - Quebec AI Institute. From applied research papers to open source projects, we're hoping to use these talks to help demystify AI for drug discovery and make the field more accessible for newcomers. M2D2 will bring our vibrant AI & drug discovery communities together and spark new perspectives, provoke discussions, and offer a safe space to share new ideas. For the best experience, please visit our YouTube channel where slides and video presentations can be referenced.
Show more...
Science
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Learning Local Equivariant Representations for Large-Scale Atomistic Dynamics | Albert Musaelian
Molecular Modelling and Drug Discovery
1 hour 9 minutes 16 seconds
2 years ago
Learning Local Equivariant Representations for Large-Scale Atomistic Dynamics | Albert Musaelian

[DISCLAIMER] - For the full visual experience, we recommend you tune in through our ⁠⁠⁠⁠⁠⁠⁠⁠⁠YouTube channel ⁠⁠⁠⁠⁠⁠⁠⁠⁠to see the presented slides.

Try datamol.io - the open source toolkit that simplifies molecular processing and featurization workflows for machine learning scientists working in drug discovery: ⁠⁠⁠⁠⁠⁠https://datamol.io/⁠⁠⁠⁠⁠⁠

If you enjoyed this talk, consider joining the ⁠⁠⁠⁠⁠⁠⁠⁠⁠Molecular Modeling and Drug Discovery (M2D2) talks⁠⁠⁠⁠⁠⁠⁠⁠⁠ live.

Also, consider joining the ⁠⁠⁠⁠⁠⁠⁠⁠⁠M2D2 Slack⁠⁠⁠⁠⁠⁠⁠⁠⁠.

Abstract: Trade-offs between accuracy and speed have long limited the applications of machine learning interatomic potentials. Recently, E(3)-equivariant architectures have demonstrated leading accuracy, data efficiency, transferability, and simulation stability, but their computational cost and scaling has generally reinforced this trade-off. In particular, the ubiquitous use of message passing architectures has precluded the extension of accessible length- and time-scales with efficient multi-GPU calculations. In this talk I will discuss Allegro, a strictly local equivariant deep learning interatomic potential designed for parallel scalability and increased computational efficiency that simultaneously exhibits excellent accuracy. After presenting the architecture, I will discuss applications and benchmarks on various materials and chemical systems, including recent demonstrations of scaling to large all-atom biomolecular systems such as solvated proteins and a 44 million atom model of the HIV capsid. Finally, I will summarize the software ecosystem and tooling around Allegro.

Speaker: Albert Musaelian

Twitter -  ⁠⁠⁠⁠⁠⁠⁠⁠⁠Prudencio⁠⁠⁠⁠⁠⁠⁠⁠⁠

Twitter - ⁠⁠⁠⁠⁠⁠⁠⁠⁠ Jonny⁠⁠⁠⁠⁠⁠⁠⁠⁠

Twitter - ⁠⁠⁠⁠⁠⁠⁠⁠⁠datamol.io

Molecular Modelling and Drug Discovery
Welcome to this space dedicated to the M2D2 Talks co-organized by Valence Discovery and Mila - Quebec AI Institute. From applied research papers to open source projects, we're hoping to use these talks to help demystify AI for drug discovery and make the field more accessible for newcomers. M2D2 will bring our vibrant AI & drug discovery communities together and spark new perspectives, provoke discussions, and offer a safe space to share new ideas. For the best experience, please visit our YouTube channel where slides and video presentations can be referenced.