Because sometimes a jellyfish prevents quenching
Chapters:
01:00 - XLeap update from Illumina
08:00 - Avidites start, splitting the problems
13:20 - In-depth comparison to Illumina
22:00 - Element summary
23:30 - Bioinformatics tools: Jellyfish, KAT
25:00 - QuickGen: GWAS
Illumina about their XLeap: https://www.illumina.com/science/genomics-research/articles/data-quality-q-scores.html
Sandiegomics about element: https://sandiegomics.com/element-beats-illumina-to-the-200-genome/
Nature paper about the chemistry: https://www.nature.com/articles/s41587-023-01750-7
Jellyfish for k-mer counting: https://github.com/gmarcais/Jellyfish
GWAS Catalog: very nice data collection: https://www.ebi.ac.uk/gwas/diagram
Correcting population-based GWAS bias: https://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1011242
Since 2018, West German Genome Center (https://wggc.de/) operates as the next generation sequencing facility and supports research in genomics & transcriptomics by providing expertise and sequencing services. WGGC is a part of the Next Generation Sequencing Competence Network (NGS-CN: https://ngs-kn.de/) - network of NGS core facilities in Germany. Listen to our podcast and we're happy to receive your feedback&questions via Email (podcast[dot]explain[at]gmail[dot]com ).
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Attribution:
Podcast Title: Explain Podcast
Creators: Iuliia Novoselova, Daniel Rickert
